Clinical Bioinformatics Development and Clinical Interpretation Assistance in Genomic Medicine, Righospitalet
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København Ø
The Center for Genomic Medicine at Rigshospitalet is looking for a clinical bioinformatician or computational scientist with variant interpretation or relevant hospital experience to join our bioinformatics group that develops and maintains advanced computational pipelines for the analysis of patient genomes and transcriptomes.
The Center for Genomic Medicine holds a combined high-throughput DNA/RNA sequencing and bioinformatics platform that offers a wide-range of genomic and transcriptomic analyses, including human whole-genome sequencing, to hospitals in Region Hovedstaden and Region Sjælland. As part of the National Genome Center we further participate and contribute with pipeline development, sequencing and quality assessment for the National genome sequencing initiative.
As part of the bioinformatics group, your tasks will be in the interface between bioinformatics production and clinical interpretation. Accordingly, responsibilities will range from assisting the development and testing of clinical pipelines in order to best support clinical interpretation in close communication with the clinical reporting groups.
We offer a stimulating environment where medical doctors, biologists and bioinformaticians work together to deliver high-quality precision medicine and research. Moreover, there will be a unique opportunity to work with bioinformatics and computing tools on real clinical data. Our work has direct implications for diagnosis of patients leading to better treatment for a variety of rare and more common genetic diseases, infections, and cancer.
Qualifications:
Our work is primarily focused on processing and analyzing DNA sequencing data, and we use SnakeMake for orchestration of a large variety of bioinformatics tools on a supercomputing infrastructure. Previous experience with this work, or aspects thereof, is an advantage - just like scientific understanding of molecular biology.
The application should comprise the following, to be uploaded in the application system:
Deadline for application August 3rd, 2021. The appointment will be based on the collective agreement with relevant union. The place of work is Rigshospitalet, Blegdamsvej, Copenhagen.
For further information, contact Frederik Otzen Bagger (email: [email protected], 3545 4668).
Kilde: Jobnet.dk
The Center for Genomic Medicine holds a combined high-throughput DNA/RNA sequencing and bioinformatics platform that offers a wide-range of genomic and transcriptomic analyses, including human whole-genome sequencing, to hospitals in Region Hovedstaden and Region Sjælland. As part of the National Genome Center we further participate and contribute with pipeline development, sequencing and quality assessment for the National genome sequencing initiative.
As part of the bioinformatics group, your tasks will be in the interface between bioinformatics production and clinical interpretation. Accordingly, responsibilities will range from assisting the development and testing of clinical pipelines in order to best support clinical interpretation in close communication with the clinical reporting groups.
We offer a stimulating environment where medical doctors, biologists and bioinformaticians work together to deliver high-quality precision medicine and research. Moreover, there will be a unique opportunity to work with bioinformatics and computing tools on real clinical data. Our work has direct implications for diagnosis of patients leading to better treatment for a variety of rare and more common genetic diseases, infections, and cancer.
Qualifications:
- A degree in bioinformatics, computational biology, computer science, computationally oriented MD or molecular biologist, or similar
- Proficient in general programming languages, including a working knowledge of Python
- Proficient with Linux-based operating systems and shell scripting
- You like to work in a team and is motivated by working in an interdisciplinary environment.
- PhD in bioinformatics, genomics, or clinical data interpretation is a plus
- Experience with variant calling, variant classification and variant interpretation is a plus
- Experience from working in a hospital environment is a plus
- Experience with R is a plus
- Fluency in English written and spoken. Danish at level equivalent to at least Prøve i Dansk 3 (PD3) is a plus
Our work is primarily focused on processing and analyzing DNA sequencing data, and we use SnakeMake for orchestration of a large variety of bioinformatics tools on a supercomputing infrastructure. Previous experience with this work, or aspects thereof, is an advantage - just like scientific understanding of molecular biology.
The application should comprise the following, to be uploaded in the application system:
- A brief introductory letter outlining how you see yourself as part of the bioinformatics unit
- A curriculum vitae and a full publication list
- A short description of past and present research activities
- Relevant diplomas
Deadline for application August 3rd, 2021. The appointment will be based on the collective agreement with relevant union. The place of work is Rigshospitalet, Blegdamsvej, Copenhagen.
For further information, contact Frederik Otzen Bagger (email: [email protected], 3545 4668).
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Biolog", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i København Ø.
Jobbet er oprettet på vores service den 2.7.2021, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Biolog
- København Ø
- Tirsdag den 03. august 2021
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