PhD fellow in computational biology/computer science
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København N
Department of Biology, Faculty of Science at University of Copenhagen is offering a PhD scholarship in Bioinformatics/computer science commencing 15 August 2021 or as soon as possible thereafter.
Part of the International Alliance of Research Universities (IARU), and among Europe’s top-ranking universities, the University of Copenhagen promotes research and teaching of the highest international standard. Rich in tradition and modern in outlook, the University gives students and staff the opportunity to cultivate their talent in an ambitious and informal environment. An effective organisation – with good working conditions and a collaborative work culture – creates the ideal framework for a successful academic career.
Project description
The research focus is to develop new computational algorithms for solving fundamental biological problems of genome assembly, haplotyping and single-cell modalities. We seek motivated candidates to develop sophisticated computational algorithms/machine learning methods to integrate multiple complex datasets to yield meaningful insights into human health and biodiversity. More specifically, we are interested in integrating third-generation sequencing datasets for tens/hundreds of samples (healthy/diseased). The computational models (tools) may also be relevant to large-scale haplotyping efforts such as Human Pangenome project, Personal Genome Project and Darwin Tree of Life. Refer publications: https://scholar.google.com/citations?hl=en&user=_Sn07lgAAAAJ&view_op=list_works&sortby=pubdate
Core/co-supervisor Tenure Track Assistant Professor, Shilpa Garg, Department of Biology, email: [email protected]. Principal supervisor Associate Professor Robin Andersson, Department of Biology, e-mail: [email protected], Direct Phone: 35330245.
Job description
The position is available for a 3-year period and your key tasks as a PhD student at SCIENCE are:
Formal requirements
Applicants should hold an MSc degree in Bioinformatics/computer science/Biology with good results and good English skills. As criteria for the assessment of your qualifications emphasis will also be laid on previous publications (if any) and relevant work experience.
Terms of employment
The position is covered by the Memorandum on Job Structure for Academic Staff.
Terms of appointment and payment accord to the agreement between the Ministry of Finance and The Danish Confederation of Professional Associations on Academics in the State.
The starting salary is currently at a minimum DKK 333,464 (approx. €44,461) including annual supplement (+ pension at a minimum DKK 54,191). Negotiation for salary supplement is possible.
Integrated MSc and PhD Scheme
The position is also available for candidates who are (or are eligible to be) enrolled at one of the faculty’s master programmes in Bioinformatics/computer science/Biology. The duration of the integrated programme depends on the amount of credits that you have passed on your MSc programme. For further information about the study programme please see: www.science.ku.dk/phd, “Study Structures”.
Scholarship and terms of employmentfor integrated MSc and PhD
PhD grant portions (Ph.D.‐SU klip)
In the period up to the completion of the MSc programme (up to three years), the student is entitled to so-called PhD grant portions. The grant portions are financed by the grant donor but not by the Danish State Educational Grant and Loan Scheme Agency (as is the case for the ordinary study grant portions on the BSc and MSc programmes). They are called PhD grant portions because this kind of remuneration is regulated and described in the Executive Order on the State Educational Grant and Loan Scheme in Denmark (SU‐bekendtgørelsen), and because the value of a PhD grant portion corresponds to the value of an ordinary Danish study grant portion. Students are awarded 48 PhD grant portions during the period of their MSc and PhD studies.
48 PhD grant portions at DKK 6,243 each, corresponding to DKK 299,664 (approx. €39,955).
'Duty work'
As a supplement to the PhD grant portions, the student may, in accordance with the collective agreement of the Danish Confederation of Professional Associations (AC), be offered 'duty work'. In the period up to the completion of the MSc programme, students performing 'duty work' are paid by the hour. UCPH has decided to offer students on integrated MSc and PhD schemes 150 hours of 'duty work' per year during Part A of the programme (until two years of the combined programme of study remain). 'Duty work' during Part A if it has a duration of three years: 450 hours at a rate of DKK 221.34 (+ 12.5% holiday pay), corresponding to DKK 112,052 (approx. €14,940)
For further information about Part A please see: https://www.science.ku.dk/phd/studystructure/integratedphd/
Salary in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC)
In the period after the completion of the MSc programme, the student is employed as a PhD scholar and is remunerated in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC). The scheme is arranged in such a way that students graduate from the MSc programme at a time when there are two years left of the integrated programme. For this reason, the salary must be paid for a period of two years in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC). The amounts specified include a supplement locally agreed upon as well as pension contributions: Salary as a PhD scholar: 24 months at a rate of DKK 32,304 (including pension contributions and supplement), corresponding to DKK 775,311 (approx. €103,374).
Application Procedure
The application, in English, must be submitted electronically by clicking APPLY NOW below.
Please include
Reference letters must be uploaded by the applicant him/herself. The recruiting person must NOT obtain reference letters which content is not known to the applicant him/herself. This is against Danish law.
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
The deadline for applications is 2 June, 2021, 23:59 GMT +2.
After the expiry of the deadline for applications, the authorized recruitment manager selects applicants for assessment on the advice of the Interview Committee. Afterwards an assessment committee will be appointed to evaluate the selected applications. The applicants will be notified of the composition of the committee and the final selection of a successful candidate will be made by the Head of Department, based on the recommendations of the assessment committee and the interview committee.
The main criterion for selection will be the research potential of the applicant and the above mentioned skills. The successful candidate will then be requested to formally apply for enrolment as a PhD student at the PhD school of Science. You can read more about the recruitment process at https://employment.ku.dk/faculty/recruitment-process/.
Questions
For specific information about the PhD scholarship, please contact core/co-supervisor, Tenure-Track Assistant Professor Shilpa Garg, Department of Biology. e-mail: [email protected].
General information about PhD programmes at SCIENCE is available at https://www.science.ku.dk/phd.
Kilde: Jobnet.dk
Part of the International Alliance of Research Universities (IARU), and among Europe’s top-ranking universities, the University of Copenhagen promotes research and teaching of the highest international standard. Rich in tradition and modern in outlook, the University gives students and staff the opportunity to cultivate their talent in an ambitious and informal environment. An effective organisation – with good working conditions and a collaborative work culture – creates the ideal framework for a successful academic career.
Project description
The research focus is to develop new computational algorithms for solving fundamental biological problems of genome assembly, haplotyping and single-cell modalities. We seek motivated candidates to develop sophisticated computational algorithms/machine learning methods to integrate multiple complex datasets to yield meaningful insights into human health and biodiversity. More specifically, we are interested in integrating third-generation sequencing datasets for tens/hundreds of samples (healthy/diseased). The computational models (tools) may also be relevant to large-scale haplotyping efforts such as Human Pangenome project, Personal Genome Project and Darwin Tree of Life. Refer publications: https://scholar.google.com/citations?hl=en&user=_Sn07lgAAAAJ&view_op=list_works&sortby=pubdate
Core/co-supervisor Tenure Track Assistant Professor, Shilpa Garg, Department of Biology, email: [email protected]. Principal supervisor Associate Professor Robin Andersson, Department of Biology, e-mail: [email protected], Direct Phone: 35330245.
Job description
The position is available for a 3-year period and your key tasks as a PhD student at SCIENCE are:
- To manage and carry through your research project
- Attend PhD courses
- Write scientific articles and your PhD thesis
- Teach and disseminate your research
- To stay at an external research institution for a few months, preferably abroad
- Work for the department
- Implement efficient computational methods and analyze large-scale datasets
Formal requirements
Applicants should hold an MSc degree in Bioinformatics/computer science/Biology with good results and good English skills. As criteria for the assessment of your qualifications emphasis will also be laid on previous publications (if any) and relevant work experience.
Terms of employment
The position is covered by the Memorandum on Job Structure for Academic Staff.
Terms of appointment and payment accord to the agreement between the Ministry of Finance and The Danish Confederation of Professional Associations on Academics in the State.
The starting salary is currently at a minimum DKK 333,464 (approx. €44,461) including annual supplement (+ pension at a minimum DKK 54,191). Negotiation for salary supplement is possible.
Integrated MSc and PhD Scheme
The position is also available for candidates who are (or are eligible to be) enrolled at one of the faculty’s master programmes in Bioinformatics/computer science/Biology. The duration of the integrated programme depends on the amount of credits that you have passed on your MSc programme. For further information about the study programme please see: www.science.ku.dk/phd, “Study Structures”.
Scholarship and terms of employmentfor integrated MSc and PhD
PhD grant portions (Ph.D.‐SU klip)
In the period up to the completion of the MSc programme (up to three years), the student is entitled to so-called PhD grant portions. The grant portions are financed by the grant donor but not by the Danish State Educational Grant and Loan Scheme Agency (as is the case for the ordinary study grant portions on the BSc and MSc programmes). They are called PhD grant portions because this kind of remuneration is regulated and described in the Executive Order on the State Educational Grant and Loan Scheme in Denmark (SU‐bekendtgørelsen), and because the value of a PhD grant portion corresponds to the value of an ordinary Danish study grant portion. Students are awarded 48 PhD grant portions during the period of their MSc and PhD studies.
48 PhD grant portions at DKK 6,243 each, corresponding to DKK 299,664 (approx. €39,955).
'Duty work'
As a supplement to the PhD grant portions, the student may, in accordance with the collective agreement of the Danish Confederation of Professional Associations (AC), be offered 'duty work'. In the period up to the completion of the MSc programme, students performing 'duty work' are paid by the hour. UCPH has decided to offer students on integrated MSc and PhD schemes 150 hours of 'duty work' per year during Part A of the programme (until two years of the combined programme of study remain). 'Duty work' during Part A if it has a duration of three years: 450 hours at a rate of DKK 221.34 (+ 12.5% holiday pay), corresponding to DKK 112,052 (approx. €14,940)
For further information about Part A please see: https://www.science.ku.dk/phd/studystructure/integratedphd/
Salary in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC)
In the period after the completion of the MSc programme, the student is employed as a PhD scholar and is remunerated in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC). The scheme is arranged in such a way that students graduate from the MSc programme at a time when there are two years left of the integrated programme. For this reason, the salary must be paid for a period of two years in accordance with the collective agreement with the Danish Confederation of Professional Associations (AC). The amounts specified include a supplement locally agreed upon as well as pension contributions: Salary as a PhD scholar: 24 months at a rate of DKK 32,304 (including pension contributions and supplement), corresponding to DKK 775,311 (approx. €103,374).
Application Procedure
The application, in English, must be submitted electronically by clicking APPLY NOW below.
Please include
- CV
- Diploma and transcripts of records (BSc and MSc)
- Acceptance Letter for the relevant MSc Programme at SCIENCE, if any
- Other information for consideration, e.g. list of publications (if any)
- 1-3 reference letters (if any)
Reference letters must be uploaded by the applicant him/herself. The recruiting person must NOT obtain reference letters which content is not known to the applicant him/herself. This is against Danish law.
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
The deadline for applications is 2 June, 2021, 23:59 GMT +2.
After the expiry of the deadline for applications, the authorized recruitment manager selects applicants for assessment on the advice of the Interview Committee. Afterwards an assessment committee will be appointed to evaluate the selected applications. The applicants will be notified of the composition of the committee and the final selection of a successful candidate will be made by the Head of Department, based on the recommendations of the assessment committee and the interview committee.
The main criterion for selection will be the research potential of the applicant and the above mentioned skills. The successful candidate will then be requested to formally apply for enrolment as a PhD student at the PhD school of Science. You can read more about the recruitment process at https://employment.ku.dk/faculty/recruitment-process/.
Questions
For specific information about the PhD scholarship, please contact core/co-supervisor, Tenure-Track Assistant Professor Shilpa Garg, Department of Biology. e-mail: [email protected].
General information about PhD programmes at SCIENCE is available at https://www.science.ku.dk/phd.
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Forsker", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i København N.
Jobbet er oprettet på vores service den 19.5.2021, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Forsker
- København N
- Onsdag den 02. juni 2021
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