Staff Scientist for the Single-Cell Omics Platform
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We are looking for a highly skilled and motivated Staff Scientist to support our efforts in the Single Cell Omics platform to start 1 November 2021 or after agreement. The platform provides access to the latest single cell transcriptomics/epigenetics techniques, to scalable sequencing and to efficient computational workflows for single cell data processing, data normalization, data visualization and data analysis.
About us
The Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR) was established in 2010 to conduct fundamental research on metabolism. The Center has around 250 employees, consisting of 21 research groups and 5 technology platforms, who work in a vibrant international research environment with a focus on interdisciplinary collaboration. Our researchers share a common purpose as they seek to transform the basic understanding of the mechanisms involved in metabolic health and disease, and to accelerate this knowledge towards new prevention and treatment strategies. The Center’s research has resulted in seminal discoveries as to how genes, hormones, and environmental factors influence metabolic health and disease throughout life. You may read more about us here: www.cbmr.ku.dk.
The position available is in the Single-Cell Omics Platform, a service platform, which was established in 2018 to provide CBMR researchers access to the latest cutting-edge bulk and single-cell transcriptomics and epigenetics techniques. Currently, the platform team consists of Laboratory Technicians, Bioinformaticians, a Lead Developer and a Platform Manager. You may read more about the platform at https://cbmr.ku.dk/researchfacilities/single-cell-omics/.
Your job:
As a Staff Scientist in the Single-Cell Omics Platform, you will be responsible for generating, processing and analysing bulk and single-cell transcriptomic and epigenetics data. We are employing state-of-the-art equipment, have solid expertise in working with single-cell data and are embedded tightly into the Danish single-cell community. You will be responsible for the development and maintenance of computational tools and enabling research groups at the Center to fully leverage the potential of single-cell data in their front-line research. The Platform is an integral part of the Center and hence, a large part of the work tasks will be focused on interacting with scientific research groups across the Center.
Primary tasks
Your profile
Required education/skills
Personal skills
Place of employment
The place of employment is the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen. We offer creative and stimulating working conditions in dynamic and international research environment.
Terms of salary and employment
The employment as Staff Scientist (AC-TAP FU) is a part-time fixed-term position for 12-hours per week for 1 year. Starting date is 1 November 1 2021 or after agreement.
Employment will be in accordance with the provisions of the collective agreement between the Danish Ministry of Finance and AC (the Danish Confederation of Professional Associations). The monthly salary will be based on the number of years of work experience (seniority) with the possibility to negotiate a salary supplement based on prior experiences and qualifications.
Questions
For further questions about the job description and qualifications, please contact Platform Manager Mie Mechta at [email protected]. For questions regarding the recruitment procedure, please contact SUND HR CBMR at [email protected]
Application
Your application in English should include:
Please submit your application by clicking on “Apply Now” below. Only online applications will be accepted.
Application deadline: 19 August 2021, 23.59 CET
We reserve the right not to consider material received after the deadline, and not to consider applications that do not live up to the abovementioned requirements.
The University of Copenhagen wishes to reflect the diversity of society and welcome applications from all qualified candidates regardless of personal background.
Kilde: Jobnet.dk
About us
The Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR) was established in 2010 to conduct fundamental research on metabolism. The Center has around 250 employees, consisting of 21 research groups and 5 technology platforms, who work in a vibrant international research environment with a focus on interdisciplinary collaboration. Our researchers share a common purpose as they seek to transform the basic understanding of the mechanisms involved in metabolic health and disease, and to accelerate this knowledge towards new prevention and treatment strategies. The Center’s research has resulted in seminal discoveries as to how genes, hormones, and environmental factors influence metabolic health and disease throughout life. You may read more about us here: www.cbmr.ku.dk.
The position available is in the Single-Cell Omics Platform, a service platform, which was established in 2018 to provide CBMR researchers access to the latest cutting-edge bulk and single-cell transcriptomics and epigenetics techniques. Currently, the platform team consists of Laboratory Technicians, Bioinformaticians, a Lead Developer and a Platform Manager. You may read more about the platform at https://cbmr.ku.dk/researchfacilities/single-cell-omics/.
Your job:
As a Staff Scientist in the Single-Cell Omics Platform, you will be responsible for generating, processing and analysing bulk and single-cell transcriptomic and epigenetics data. We are employing state-of-the-art equipment, have solid expertise in working with single-cell data and are embedded tightly into the Danish single-cell community. You will be responsible for the development and maintenance of computational tools and enabling research groups at the Center to fully leverage the potential of single-cell data in their front-line research. The Platform is an integral part of the Center and hence, a large part of the work tasks will be focused on interacting with scientific research groups across the Center.
Primary tasks
- To develop and maintain computational workflows for easy processing and examination of single-cell ATACseq data and results
- To apply the computational bulk and single-cell tools on primary data from research groups across the Center
Your profile
Required education/skills
- A Bachelor in applied math, applied statistics, bioinformatics, computer science, systems biology, biotechnology or the like
- Solid programming skills in the scripting languages Python and R
- Experience with workflow management using Targets or Snakemake
- Solid experience working with single-cell transcriptomics software such as Seurat
- Experience with computational tools for pre-processing of single cell sequencing data
- Experience in analyzing single-cell epigenetics
- Experience working with data visualization
- Experience in using the Unix/Linux operating system
Personal skills
- Motivated and hardworking personality with good social skills
- Fluent in written and spoken English is an absolute requirement
- Interested in app development
Place of employment
The place of employment is the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen. We offer creative and stimulating working conditions in dynamic and international research environment.
Terms of salary and employment
The employment as Staff Scientist (AC-TAP FU) is a part-time fixed-term position for 12-hours per week for 1 year. Starting date is 1 November 1 2021 or after agreement.
Employment will be in accordance with the provisions of the collective agreement between the Danish Ministry of Finance and AC (the Danish Confederation of Professional Associations). The monthly salary will be based on the number of years of work experience (seniority) with the possibility to negotiate a salary supplement based on prior experiences and qualifications.
Questions
For further questions about the job description and qualifications, please contact Platform Manager Mie Mechta at [email protected]. For questions regarding the recruitment procedure, please contact SUND HR CBMR at [email protected]
Application
Your application in English should include:
- Curriculum vitae with references
- Motivation letter
Please submit your application by clicking on “Apply Now” below. Only online applications will be accepted.
Application deadline: 19 August 2021, 23.59 CET
We reserve the right not to consider material received after the deadline, and not to consider applications that do not live up to the abovementioned requirements.
The University of Copenhagen wishes to reflect the diversity of society and welcome applications from all qualified candidates regardless of personal background.
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Forsker", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i København N.
Jobbet er oprettet på vores service den 5.8.2021, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Forsker
- København N
- Torsdag den 19. august 2021
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