Research Assistant: Bioinformatics and Machine Learning for Single-cell Genomics
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Odense M
A Bioinformatician position is available at the Natarajan Lab for computational analysis of genomics datasets and method development. Our interdisciplinary and international team uses single-cell genomic approaches to study transcriptional regulation in stem cell biology and embryonic development. We are part of part of Danish-Institute of Advanced Study (D-IAS) and based at the Functional Genomics and Metabolism Unit, Department of Biochemistry and Molecular Biology, University of Southern Denmark (SDU).
We are looking for a highly motivated candidate to develop computational tools and analysis methods for genomics data. The position would involve development of integrative bioinformatic approaches, statistical data analysis and machine learning models to combine single-cell transcriptomics, epigenomics, spatial and multimodal data to study transcriptional regulation and other biological problems. Depending on background and interest, wet-lab experiments with microfluidics, imaging and sequencing would be possible.
The selected applicant will be strongly supported by skilled colleagues, our core infrastructure, expertise in single-cell transcriptomics, sequencing, computational analysis (IMADA), Bio-imaging (DaMBIC) and facilities (eScience Centre, SDUCloud and National HPC Centre). We closely collaborate with international and national researchers, and the selected applicant will have an opportunity to work with international Human Cell Atlas computational community.
Your profile:
Essential:
• Master’s degree in relevant areas (Bioinformatics, Computational biology, Genetics, Biostatistics, Mathematics or a related field). Candidates with PhD degree would be given preference.
• Proficiency in programming (preferably Python and/or R) and in UNIX/Linux.
• Knowledge of statistical data analysis and/or machine learning.
• Proven understanding and experience in the fields of genomics and high-throughput data analysis.
• Fluency in English language (reading/writing/speaking).
Desirable
• Experience in applying Machine learning and Bayesian approaches to large datasets.
• Knowledge (or interest) in molecular/cellular biology.
• Experience with the use of HPC systems.
• Contribution to biological discoveries and interdisciplinary science.
We offer:
The bioinformatician/research assistant position is available for three years.
Start date: 15 April 2020 or soon thereafter. Application deadline: 31 March 2020.
Informal queries and letters of interest are welcome. Please write to Kedar Natarajan, [email protected].
Application, salary etc.
The successful applicant will be employed in accordance with the agreement between the Ministry of Finance and AC (the Danish Confederation of Professional Associations). Please check links for more information on salary and taxation.
The application must be in English and include the following:
• Letter of motivation, including details on qualifications within the subject area (max. one page).
• CV including previous employments, summarized education and relevant computational skills.
• A list of publications and highlighting key papers and contributions.
• Two letters of recommendation from supervisors or previous employers. Referees are welcome to send letters directly to [email protected], mentioning candidate’s name and the position in question in the subject line. And please note that these also need to reach us before deadline to be considered.
Shortlisting may be used in the assessment process.
Incomplete applications and applications received after the deadline will neither be considered nor evaluated.
To qualify you must have passed a PhD or equivalent. Applications will be assessed by an expert assessor/committee. Applicants will be informed of their assessment by the university.
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
Applications must be submitted electronically using the link "Apply online". Attached files must be in Adobe PDF or Word format. Each box can only contain a single file of max. 10 Mb. We strongly recommend that you read How to apply before you apply.
Further information for international applicants about entering and working in Denmark.
We are looking for a highly motivated candidate to develop computational tools and analysis methods for genomics data. The position would involve development of integrative bioinformatic approaches, statistical data analysis and machine learning models to combine single-cell transcriptomics, epigenomics, spatial and multimodal data to study transcriptional regulation and other biological problems. Depending on background and interest, wet-lab experiments with microfluidics, imaging and sequencing would be possible.
The selected applicant will be strongly supported by skilled colleagues, our core infrastructure, expertise in single-cell transcriptomics, sequencing, computational analysis (IMADA), Bio-imaging (DaMBIC) and facilities (eScience Centre, SDUCloud and National HPC Centre). We closely collaborate with international and national researchers, and the selected applicant will have an opportunity to work with international Human Cell Atlas computational community.
Your profile:
Essential:
• Master’s degree in relevant areas (Bioinformatics, Computational biology, Genetics, Biostatistics, Mathematics or a related field). Candidates with PhD degree would be given preference.
• Proficiency in programming (preferably Python and/or R) and in UNIX/Linux.
• Knowledge of statistical data analysis and/or machine learning.
• Proven understanding and experience in the fields of genomics and high-throughput data analysis.
• Fluency in English language (reading/writing/speaking).
Desirable
• Experience in applying Machine learning and Bayesian approaches to large datasets.
• Knowledge (or interest) in molecular/cellular biology.
• Experience with the use of HPC systems.
• Contribution to biological discoveries and interdisciplinary science.
We offer:
The bioinformatician/research assistant position is available for three years.
Start date: 15 April 2020 or soon thereafter. Application deadline: 31 March 2020.
Informal queries and letters of interest are welcome. Please write to Kedar Natarajan, [email protected].
Application, salary etc.
The successful applicant will be employed in accordance with the agreement between the Ministry of Finance and AC (the Danish Confederation of Professional Associations). Please check links for more information on salary and taxation.
The application must be in English and include the following:
• Letter of motivation, including details on qualifications within the subject area (max. one page).
• CV including previous employments, summarized education and relevant computational skills.
• A list of publications and highlighting key papers and contributions.
• Two letters of recommendation from supervisors or previous employers. Referees are welcome to send letters directly to [email protected], mentioning candidate’s name and the position in question in the subject line. And please note that these also need to reach us before deadline to be considered.
Shortlisting may be used in the assessment process.
Incomplete applications and applications received after the deadline will neither be considered nor evaluated.
To qualify you must have passed a PhD or equivalent. Applications will be assessed by an expert assessor/committee. Applicants will be informed of their assessment by the university.
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
Applications must be submitted electronically using the link "Apply online". Attached files must be in Adobe PDF or Word format. Each box can only contain a single file of max. 10 Mb. We strongly recommend that you read How to apply before you apply.
Further information for international applicants about entering and working in Denmark.
Information og data
Denne ledige stilling har jobtypen "Forsker", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i Odense M.
Jobbet er oprettet på vores service den 19.2.2020, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Forsker
- Odense M
- Tirsdag den 31. marts 2020
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