PhD in Artificial Intelligence in Clinical Proteomics for Precision Medicine
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Odense M
The Department of Mathematics and Computer Science and the Department of Biochemistry and Molecular Biology at the University of Southern Denmark (Associate Professor Richard Röttger and Associate Professor Veit Schwämmle) invite applications for a PhD scholarship within the field of data science to be filled by 15 June or soon thereafter, for a period of three years. Application deadline: 26 May 2020.
The research project entails the implementation and optimization of deep learning models for enhanced identification of peptides and proteins from clinical mass spectrometry data. The selected candidate will use high-end artificial intelligence methods to fully utilize the information contained in data from tandem LC-MS experiments, with the aim to vastly reduce both instrument time and expenses.
The Computational Biology Group offers a wide expertise in machine learning of biomedical data, both in the realm of unsupervised as well as supervised learning. We also provide the selected candidate with direct access to state-of-the-art computer infrastructure optimized for deep learning.
The Protein Research Group offers a strong international research environment in protein chemistry, biomolecular mass spectrometry, and computational proteomics. Our computational proteomics efforts include the implementation of reproducible proteomics workflows, statistical tools for deciphering PTMs and their cross-talk, and quantitative functional proteomics.
We are seeking outstanding candidates with strong analytical and problem-solving skills, who are strong in written and oral communication (in English), and have documented experience in machine learning (in particular deep learning) and computational proteomics. The successful candidate will participate in independent research projects and assist in the supervision of undergraduate students.
Place of work:
Protein Research Group (Associate Professor Veit Schwämmle, [email protected]), Department of Biochemistry and Molecular Biology and Computational Biology Group (Associate Professor Richard Röttger, [email protected]), Department of Mathematics and Computer Science, both located at the main campus of the University of Southern Denmark, Odense, Denmark.
For further information please contact Richard Röttger, tel.: +45 6550 2337, e-mail: [email protected].
Application, salary etc.
Appointment as a PhD Research Fellow is for three years. Employment stops automatically at the end of the period. The holder of the scholarship is not allowed to have other paid employment during the three-year period.
The successful applicant will be employed in accordance with the agreement on salaried PhD scholars between the Ministry of Finance and AC (the Danish Confederation of Professional Associations). Please check links for more information on salary and taxation.
The successful candidate will be enrolled at this university in accordance with faculty regulations and the Danish Ministerial Order on the PhD Programme at the Universities (PhD order).
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
Application must be made in the form of a Declaration of Interest including the following:
• A research proposal/description of your approach to the above project (max one page excluding references)
• A letter stating your specific interest, motivation and qualifications for the project in question (max. two pages) (please attach this under box "Application form")
• Detailed CV, including personal contact information
• Copies of diplomas, Bachelor as well as Master’s degree, including transcript of notes/grades
• At least two signed reference letters. Should your referees wish to send their letters directly to us, please have them use e-mail: [email protected] mentioning your name and the title of the position in the subject line. And please note that these also need to reach us before deadline.
Shortlisting may be used in the assessment process.
Further information about the PhD-study can be found at the homepage of the University.
Applications must be submitted electronically using the link "Apply online". Attached files must be in Adobe PDF or Word format. Each box can only contain a single file of max. 10 Mb. We strongly recommend that you read How to apply before you apply.
Incomplete applications and applications received after the deadline will neither be considered nor evaluated. This also applies to reference letters.
Further information for international applicants about entering and working in Denmark.
The research project entails the implementation and optimization of deep learning models for enhanced identification of peptides and proteins from clinical mass spectrometry data. The selected candidate will use high-end artificial intelligence methods to fully utilize the information contained in data from tandem LC-MS experiments, with the aim to vastly reduce both instrument time and expenses.
The Computational Biology Group offers a wide expertise in machine learning of biomedical data, both in the realm of unsupervised as well as supervised learning. We also provide the selected candidate with direct access to state-of-the-art computer infrastructure optimized for deep learning.
The Protein Research Group offers a strong international research environment in protein chemistry, biomolecular mass spectrometry, and computational proteomics. Our computational proteomics efforts include the implementation of reproducible proteomics workflows, statistical tools for deciphering PTMs and their cross-talk, and quantitative functional proteomics.
We are seeking outstanding candidates with strong analytical and problem-solving skills, who are strong in written and oral communication (in English), and have documented experience in machine learning (in particular deep learning) and computational proteomics. The successful candidate will participate in independent research projects and assist in the supervision of undergraduate students.
Place of work:
Protein Research Group (Associate Professor Veit Schwämmle, [email protected]), Department of Biochemistry and Molecular Biology and Computational Biology Group (Associate Professor Richard Röttger, [email protected]), Department of Mathematics and Computer Science, both located at the main campus of the University of Southern Denmark, Odense, Denmark.
For further information please contact Richard Röttger, tel.: +45 6550 2337, e-mail: [email protected].
Application, salary etc.
Appointment as a PhD Research Fellow is for three years. Employment stops automatically at the end of the period. The holder of the scholarship is not allowed to have other paid employment during the three-year period.
The successful applicant will be employed in accordance with the agreement on salaried PhD scholars between the Ministry of Finance and AC (the Danish Confederation of Professional Associations). Please check links for more information on salary and taxation.
The successful candidate will be enrolled at this university in accordance with faculty regulations and the Danish Ministerial Order on the PhD Programme at the Universities (PhD order).
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
Application must be made in the form of a Declaration of Interest including the following:
• A research proposal/description of your approach to the above project (max one page excluding references)
• A letter stating your specific interest, motivation and qualifications for the project in question (max. two pages) (please attach this under box "Application form")
• Detailed CV, including personal contact information
• Copies of diplomas, Bachelor as well as Master’s degree, including transcript of notes/grades
• At least two signed reference letters. Should your referees wish to send their letters directly to us, please have them use e-mail: [email protected] mentioning your name and the title of the position in the subject line. And please note that these also need to reach us before deadline.
Shortlisting may be used in the assessment process.
Further information about the PhD-study can be found at the homepage of the University.
Applications must be submitted electronically using the link "Apply online". Attached files must be in Adobe PDF or Word format. Each box can only contain a single file of max. 10 Mb. We strongly recommend that you read How to apply before you apply.
Incomplete applications and applications received after the deadline will neither be considered nor evaluated. This also applies to reference letters.
Further information for international applicants about entering and working in Denmark.
Information og data
Denne ledige stilling har jobtypen "Forsker", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i Odense M.
Jobbet er oprettet på vores service den 28.4.2020, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Forsker
- Odense M
- Tirsdag den 26. maj 2020
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