Bioinformatician for the Single-Cell Omics Platform
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Freelance - København Ø
We are seeking a Bioinformatician to strengthen our abilities to draw robust biological inferences from large-scale data generated in the Single-Cell Omics Platform. The role is an exciting opportunity for ambitious candidates with a bioinformatics background to work in the field of genomics services. The successful candidate will work in the Single-Cell Omics Platform that provides the Center’s researchers with cutting-edge bulk and single-cell transcriptomics and epigenetics techniques, using the state-of-the-art equipment, data science and machine learning approaches. The starting date is February 1, 2024, or after agreement.
About CBMR
Our researchers share a common purpose as they seek to transform the basic understanding of the mechanisms involved in metabolic health and disease, and to accelerate this knowledge towards new prevention and treatment strategies.
The Center has around 260 employees, consisting of 22 research groups and 5 technology platforms, who work in a vibrant international research environment with a focus on interdisciplinary collaboration.
The Center’s research has resulted in seminal discoveries as to how genes, hormones, and environmental factors influence metabolic health and disease throughout life. You may read more about us at www.cbmr.ku.dk.
About the Platform
The Single-Cell Omics Platform is an integral part of the Center and is embedded tightly into the Danish single-cell community. The team has solid expertise in working with single-cell data, and currently comprises Laboratory Technicians, Bioinformaticians, Mathematicians and a Platform Manager.
You will work directly with many research groups on a daily basis and contribute to their research, which is often published in high impact scientific journals. See the latest publications, and learn more about the platform, here: Single Cell Omics Platform – University of Copenhagen (ku.dk)
The role
As a Bioinformatician in the Single-Cell Omics Platform, you will be responsible for processing, analyzing, and interpreting both single-cell and bulk sequencing data as well as developing and implementing new analysis workflows.
Primary tasks
Your profile
Required education/skills:
Personal skills:
Desirable criteria:
We offer
Creative and stimulating working conditions in dynamic and international research environment.
Place of employment
The place of employment is the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen.
Terms of salary and employment
The employment as a bioinformatician is a full-time and permanent position starting February 1, 2024, or after agreement.
Employment will be as Research Consultant in accordance with the provisions of the collective agreement between the Danish ministry of Finance and AC (the Danish Confederation of Professional Associations), with the possibility to negotiate a salary supplement based on prior experiences and qualifications.
Questions
For further questions about the job description and qualifications, please contact Platform manager Mie Mechta at [email protected]. For questions regarding the recruitment procedure, please contact SUND HR CBMR at [email protected].
Application procedure
Your application, in English, should include:
Please submit your application by clicking on “Apply now” below. Only online applications will be accepted.
Application deadline: 9 November 2023 at 23:59 CET.
We reserve the right not to consider material received after the deadline, and not to consider application that to not live up to the abovementioned requirements.
The University of Copenhagen wishes to reflect the diversity of society and welcome applications from all qualified candidates regardless of personal background.
Kilde: Jobnet.dk
About CBMR
Our researchers share a common purpose as they seek to transform the basic understanding of the mechanisms involved in metabolic health and disease, and to accelerate this knowledge towards new prevention and treatment strategies.
The Center has around 260 employees, consisting of 22 research groups and 5 technology platforms, who work in a vibrant international research environment with a focus on interdisciplinary collaboration.
The Center’s research has resulted in seminal discoveries as to how genes, hormones, and environmental factors influence metabolic health and disease throughout life. You may read more about us at www.cbmr.ku.dk.
About the Platform
The Single-Cell Omics Platform is an integral part of the Center and is embedded tightly into the Danish single-cell community. The team has solid expertise in working with single-cell data, and currently comprises Laboratory Technicians, Bioinformaticians, Mathematicians and a Platform Manager.
You will work directly with many research groups on a daily basis and contribute to their research, which is often published in high impact scientific journals. See the latest publications, and learn more about the platform, here: Single Cell Omics Platform – University of Copenhagen (ku.dk)
The role
As a Bioinformatician in the Single-Cell Omics Platform, you will be responsible for processing, analyzing, and interpreting both single-cell and bulk sequencing data as well as developing and implementing new analysis workflows.
Primary tasks
- To develop and maintain computational workflows to process and analyze both single-cell and bulk sequencing data.
- To apply computational tools on primary sequencing data from research groups across the Center.
Your profile
Required education/skills:
- A PhD degree in data science, applied math, applied statistics, bioinformatics, computer science, systems biology or the like
- 5+ years of experience analyzing RNA-, sRNA-, RRBS-, ChIP- and HiC-seq data
- Experience with processing, analysis and interpretation of single cell RNA and epigenetic assays using tools such as Seurat, Scanpy, Cell Ranger and Salmon Alevin.
- Extensive knowledge of epigenetics
- Advanced knowledge of R and domain specific languages in R
- Strong skills in statistics and data visualization, especially relating to the biological sciences
- Broad knowledge of statistical modelling frameworks for the analysis of various types of next generation sequencing data
- Extensive experience working with various types of High Performance Computing clusters
- Experience developing bioinformatics pipelines in pipeline management tools such as Snakemake or Nextflow
- Capacity to troubleshoot all steps from raw sequencing data to final results across multiple sequencing machines and analysis methods.
- Proven track record of publication in peer reviewed scientific journals
Personal skills:
- Motivated and hardworking personality with good social skills
- Motivated to instruct researchers with less advanced programming skills in using the Platform’s computational workflows
- Excellent written and oral English communication skills
Desirable criteria:
- Strong skills in scripting and working in the Linux/UNIX environment
- Understanding of the experimental protocols responsible for generating sequencing data
- Experience in reactive programming
- Experience in analyzing spatial transcriptomics data
- Experience working in a core facility
- Experience working in with cloud computing
We offer
Creative and stimulating working conditions in dynamic and international research environment.
- Highly motivated colleagues and the possibility to contribute to and co-author cutting-edge scientific publications
- Attractive employment conditions
- A centrally located workplace.
Place of employment
The place of employment is the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen.
Terms of salary and employment
The employment as a bioinformatician is a full-time and permanent position starting February 1, 2024, or after agreement.
Employment will be as Research Consultant in accordance with the provisions of the collective agreement between the Danish ministry of Finance and AC (the Danish Confederation of Professional Associations), with the possibility to negotiate a salary supplement based on prior experiences and qualifications.
Questions
For further questions about the job description and qualifications, please contact Platform manager Mie Mechta at [email protected]. For questions regarding the recruitment procedure, please contact SUND HR CBMR at [email protected].
Application procedure
Your application, in English, should include:
- A letter of motivation
- Curriculum Vitae
- Copies of relevant certificates of education
Please submit your application by clicking on “Apply now” below. Only online applications will be accepted.
Application deadline: 9 November 2023 at 23:59 CET.
We reserve the right not to consider material received after the deadline, and not to consider application that to not live up to the abovementioned requirements.
The University of Copenhagen wishes to reflect the diversity of society and welcome applications from all qualified candidates regardless of personal background.
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Konsulent", og befinder sig i kategorien "Kommunikation, marketing, salg".
Arbejdsstedet er beliggende i København Ø.
Jobbet er oprettet på vores service den 27.10.2023, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Konsulent
- København Ø
- Torsdag den 09. november 2023
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