Postdoctoral Fellowship in Microbial sequencing data analysis, Department of Biology, U...
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København Ø
This Postdoc position will be associated with two separate projects: a research project on the antibiotics resistance genes (ARGs) and mobile genetic elements (MGEs) from the early life human microbiome in humans; the other research project on the breast microbiome associated with capsular contracture. The first study aims to find the influences of antibiotics use, various environmental factors on ARGs, MGEs, mobile ARGs and the co-occurrence of ARGs and MGEs from the early life human microbiome. This project is part of the Copenhagen Prospective Study on Asthma in Childhood (COPSAC) and aims to characterize the human microbiome in early life and elucidate any correlations with the development of disease later in life.
The second study aims to use bacterial sequencing analysis and fluorescent in-situ hybridization on samples from the implant pockets of patients with prosthetic breast implants to determine if the breast microbiome in breast implant pockets is specific to capsular contracture (a complication to breast reconstruction with prosthetic implants). We wish to characterize the breast microbiome associated with capsular contracture and the breast microbiome associated with no capsular contracture (i.e. a potential beneficial/preventive microbiome). The postdoc position is for 2 years, and is funded by the Novo Nordisk Foundation. The projects will be carried out at the University of Copenhagen – Section of Microbiology, Department of Biology, the COPSAC Center, Herlev and Gentofte Hospital, University of Copenhagen and Rigshospitalet where you will engage in teamwork within the group.
The position is to be filled 1.7.2020 or as soon as possible thereafter.
Qualifications
We are looking for a highly motivated and ambitious researcher with strong experience in molecular lab work, the analysis of 16S rRNA gene Amplicon sequencing and microbial metagenomics data. Applicants should have the following qualifications:
For further information, contact: Professor Søren Sørensen, E-mail: [email protected].
Terms of employment
The position is covered by the Memorandum on Job Structure for Academic Staff.
Terms of appointment and payment accord to the agreement between the Ministry of Finance and The Danish Confederation of Professional Associations on Academics in the State.
The starting salary is currently up to DKK 434.179 including annual supplement (+ pension up to DKK 74.244). Negotiation for salary supplement is possible.
Application Procedure
The application, in English, must be submitted electronically by clicking APPLY NOW below.
Please include
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
The deadline for applications is 11 March, 2020, 23:59 GMT +1.
Procedures
After the expiry of the deadline for applications, the authorized recruitment manager selects applicants for assessment on the advice of the Interview Committee. Afterwards an assessment committee will be appointed to evaluate the selected applications. The applicants will be notified of the composition of the committee and the final selection of a successful candidate will be made by the Head of Department, based on the recommendations of the assessment committee and the interview committee.
The main criterion for selection will be the research potential of the applicant and the above mentioned skills. You can read more about the recruitment process at http://employment.ku.dk/faculty/recruitment-process/.
General information about the Section is available at https://www1.bio.ku.dk/microbiology
If you consider applying from abroad, you may find useful information on how it is to work in Denmark and at UCPH in this links: https://ism.ku.dk and https://www.workindenmark.dk/
Kilde: Jobnet.dk
The second study aims to use bacterial sequencing analysis and fluorescent in-situ hybridization on samples from the implant pockets of patients with prosthetic breast implants to determine if the breast microbiome in breast implant pockets is specific to capsular contracture (a complication to breast reconstruction with prosthetic implants). We wish to characterize the breast microbiome associated with capsular contracture and the breast microbiome associated with no capsular contracture (i.e. a potential beneficial/preventive microbiome). The postdoc position is for 2 years, and is funded by the Novo Nordisk Foundation. The projects will be carried out at the University of Copenhagen – Section of Microbiology, Department of Biology, the COPSAC Center, Herlev and Gentofte Hospital, University of Copenhagen and Rigshospitalet where you will engage in teamwork within the group.
The position is to be filled 1.7.2020 or as soon as possible thereafter.
Qualifications
We are looking for a highly motivated and ambitious researcher with strong experience in molecular lab work, the analysis of 16S rRNA gene Amplicon sequencing and microbial metagenomics data. Applicants should have the following qualifications:
- PhD in Microbiology, Bioinformatics or equivalent
- Extensive experience in lab work for qPCR, DNA extraction, sequencing library preparation, Miseq Illumina sequencing.
- Extensive experience in the analysis of 16S rRNA gene Amplicon sequencing
- Extensive experience in the analysis of large metagenomic data sets (including sequence assembly, functional annotation especially for functional genes ARGs and MGEs analysis).
- Extensive experience in the analysis of big sequencing datasets from human, animal, environmental samples
- A strong theoretical background in the ecology of microbes and/or in host-associated microbiomes.
- Fluency in English
- You will be able to engage in teamwork within the group and our collaborators.
- Extensive experience in applied research projects related to microbiology
For further information, contact: Professor Søren Sørensen, E-mail: [email protected].
Terms of employment
The position is covered by the Memorandum on Job Structure for Academic Staff.
Terms of appointment and payment accord to the agreement between the Ministry of Finance and The Danish Confederation of Professional Associations on Academics in the State.
The starting salary is currently up to DKK 434.179 including annual supplement (+ pension up to DKK 74.244). Negotiation for salary supplement is possible.
Application Procedure
The application, in English, must be submitted electronically by clicking APPLY NOW below.
Please include
- Motivated letter of application,
- Curriculum Vitae
- List of publications
- Master and PhD diplomas or transcript in English
- Full contact details (Name, address, telephone & email) of 2-3 professional referees
The University wishes our staff to reflect the diversity of society and thus welcomes applications from all qualified candidates regardless of personal background.
The deadline for applications is 11 March, 2020, 23:59 GMT +1.
Procedures
After the expiry of the deadline for applications, the authorized recruitment manager selects applicants for assessment on the advice of the Interview Committee. Afterwards an assessment committee will be appointed to evaluate the selected applications. The applicants will be notified of the composition of the committee and the final selection of a successful candidate will be made by the Head of Department, based on the recommendations of the assessment committee and the interview committee.
The main criterion for selection will be the research potential of the applicant and the above mentioned skills. You can read more about the recruitment process at http://employment.ku.dk/faculty/recruitment-process/.
General information about the Section is available at https://www1.bio.ku.dk/microbiology
If you consider applying from abroad, you may find useful information on how it is to work in Denmark and at UCPH in this links: https://ism.ku.dk and https://www.workindenmark.dk/
Kilde: Jobnet.dk
Information og data
Denne ledige stilling har jobtypen "Forsker", og befinder sig i kategorien "Sundhed og forskning".
Arbejdsstedet er beliggende i København Ø.
Jobbet er oprettet på vores service den 24.2.2020, men kan have været deaktiveret og genaktiveret igen.
Dagligt opdateret: Dette job opdateres dagligt ud fra jobudbyderens hjemmeside via vores søgemaskineteknologi og er aktivt lige nu.
- Forsker
- København Ø
- Onsdag den 11. marts 2020
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